bionix

Functional highly reproducible bioinformatics pipelines (by PapenfussLab)

Bionix Alternatives

Similar projects and alternatives to bionix

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better bionix alternative or higher similarity.

bionix reviews and mentions

Posts with mentions or reviews of bionix. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-10-03.
  • Experiences with workflow managers implemented in Haskell (funflow, porcupine, bioshake, ?)
    5 projects | /r/haskell | 3 Oct 2021
    I wasn't satisfied with this and wanted the software to be managed too, so we ended up working on BioNix (https://github.com/PapenfussLab/bionix) which does both pipeline execution and software management. This is nice because it makes everything extremely reproducible and removes a lot of the pain of dealing with setting up software etc at various HPC facilities. The down side is Nix isn't typed, so the typing aspect of bioshake was ported on the back of a ADT implementation in Nix, and at least for my work it has caught a fair few mistakes. Of course this isn't Haskell so it doesn't satisfy your criteria, just though it's worth a mention.

Stats

Basic bionix repo stats
1
74
3.7
5 months ago

PapenfussLab/bionix is an open source project licensed under BSD 3-clause "New" or "Revised" License which is an OSI approved license.

The primary programming language of bionix is Nix.


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