biomisc_julia
collection of miscellaneous command line bioinformatic scripts written in julia for speed (by olgatsiouri1996)
biomisc_R
command line bioinformatic scripts written in R (by olgatsiouri1996)
| biomisc_julia | biomisc_R | |
|---|---|---|
| 1 | 3 | |
| 1 | 23 | |
| - | - | |
| 1.8 | 0.0 | |
| almost 2 years ago | almost 2 years ago | |
| Julia | R | |
| MIT License | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
biomisc_julia
Posts with mentions or reviews of biomisc_julia.
We have used some of these posts to build our list of alternatives
and similar projects.
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biomisc_julia:collection of miscellaneous command line bioinformatic scripts written in Julia
biomisc_julia:collection of miscellaneous command line bioinformatic scripts written in Julia . It includes general fasta and pdb file hadling, plots and sequence statistics.
biomisc_R
Posts with mentions or reviews of biomisc_R.
We have used some of these posts to build our list of alternatives
and similar projects.
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Splitting multifast file into individual single fasta R
https://github.com/olgatsiouri1996/biomisc_R/blob/main/fasta_manipulation/split_multifasta_to_singlefasta.R this will help. I would recommend using sed to keep only the ids and not the full fasta headers
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how can I have R go through a fasta file opened with seqinr and run certain functions on each sequence?
https://github.com/olgatsiouri1996/biomisc_R/blob/main/sequence_statistics/calculate_biophysical_properties_multifasta.R this might help
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biomisc_R: a repository of command line bioinformatic scripts written in R
while R is a very beginner friendly and popular programming language in bioinformatic circles, there are not many repositories that contain command line scripts that can be easily used. Thats why I created biomisc_R a repository that contains scripts involved in single/multi-fasta/pdb file manipulations, sequence statistics and differential expression analysis. The scripts have been tested on windows 10 build 19041.985 and ubuntu 18.04 with R 3.6.3. if you have any questions and suggestions please let me know!
What are some alternatives?
When comparing biomisc_julia and biomisc_R you can also consider the following projects:
hermiter - Efficient Sequential and Batch Estimation of Univariate and Bivariate Probability Density Functions and Cumulative Distribution Functions along with Quantiles (Univariate) and Nonparametric Correlation (Bivariate)
sjPlot - sjPlot - Data Visualization for Statistics in Social Science
rhmmer - Simple R utilities for working with HMMER
drugfindR - Repository holding the code for the drugfindR R package
rna-seq-kallisto-sleuth - A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.