avogadrolibs
tomviz
| avogadrolibs | tomviz | |
|---|---|---|
| 1 | 2 | |
| 409 | 317 | |
| 2.4% | 0.6% | |
| 9.9 | 2.3 | |
| 2 days ago | 12 months ago | |
| C++ | C++ | |
| BSD 3-clause "New" or "Revised" License | BSD 3-clause "New" or "Revised" License |
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avogadrolibs
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What software can you recommend that can extract conformation B from a *.pdb file? Avogadro and Chimera do not appear to work, and surely there exists something better than opening it in Gaussian as a biological unit, selecting chain A and deleting it.
Feel free to track this https://github.com/OpenChemistry/avogadrolibs/issues/846
tomviz
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Slicer Software
Yeah you need a 3D volume rendering system here. There are 3D viewers available for ImageJ/Fiji (which has DICOM support), but my personal favorite stand-alone package for tif stacks (esp. for the price) is Tomviz: https://tomviz.org
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CT Scan of a Pumpkin
We build an ideal 3D Volumetric Viz tool: https://tomviz.org/ . Open-source and built for reproducible open-science. It focuses on volumetric data analysis, not just surfaces. Hopefully, HN finds it useful.
What are some alternatives?
SFML - Simple and Fast Multimedia Library
Open3D - Open3D: A Modern Library for 3D Data Processing
corona - Solar2D Game Engine main repository (ex Corona SDK)
Pangolin - Pangolin is a lightweight portable rapid development library for managing OpenGL display / interaction and abstracting video input.
openbabel - Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
matplotplusplus - Matplot++: A C++ Graphics Library for Data Visualization 📊🗾
Panda3D - Powerful, mature open-source cross-platform game engine for Python and C++, developed by Disney and CMU
cosmoscout-vr - :milky_way: A virtual universe which lets you explore, analyze and present huge planetary datasets and large simulation data in real-time.
H5J_Loader_Plugin - H5J Reader Plugin for Fiji project.
ITK - Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.