bioinformatics
Bioinformatic algorithms for the UCLA Bioinformatics Specialization (by ashinzekene)
NanoSim
Nanopore sequence read simulator (by bcgsc)
| bioinformatics | NanoSim | |
|---|---|---|
| 1 | 1 | |
| 3 | 213 | |
| - | 0.9% | |
| 6.5 | 5.6 | |
| 8 months ago | 3 months ago | |
| Python | Python | |
| - | GNU General Public License v3.0 or later |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
bioinformatics
Posts with mentions or reviews of bioinformatics.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Coding
https://github.com/ashinzekene/bioinformatics This requires more coding skills but goes over some common algorithms in bioinformatics
NanoSim
Posts with mentions or reviews of NanoSim.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-06-26.
-
Raw nanowire sequencer data
Alternatively, you can make your own data using NanoSim. I haven't used it myself yet but it generates signal level files with similar error profiles to the real thing. https://github.com/bcgsc/NanoSim
What are some alternatives?
When comparing bioinformatics and NanoSim you can also consider the following projects:
masurca
bonito - A PyTorch Basecaller for Oxford Nanopore Reads
OSGenome - An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
Genome - Genome Network Ala Neural Network
deepvariant - DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dash - Data Apps & Dashboards for Python. No JavaScript Required.
Biopython - Official git repository for Biopython (originally converted from CVS)