amazon-genomics-cli-demos
Demos of what can be done with the Amazon Genomics CLI (by aws-samples)
full_spectrum_bioinformatics
An open-access bioinformatics text (by zaneveld)
| amazon-genomics-cli-demos | full_spectrum_bioinformatics | |
|---|---|---|
| 1 | 1 | |
| 3 | 68 | |
| - | - | |
| 0.0 | 6.2 | |
| about 2 years ago | 2 months ago | |
| Jupyter Notebook | Jupyter Notebook | |
| MIT No Attribution | - |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
amazon-genomics-cli-demos
Posts with mentions or reviews of amazon-genomics-cli-demos.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-04-26.
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Profiling workflows with the Amazon Genomics CLI
Importantly, the method above can be used for any workflow that AGC can run so you don’t have to remember engine specific details of how to get such profiling information. This opens up the possibility of comparing the performance a workflow across workflow engines, which is something I’ll explore further in a future blog post. In the meantime, I recommend generating some plots of your own! All the Python code I used above is available in Github.
full_spectrum_bioinformatics
Posts with mentions or reviews of full_spectrum_bioinformatics.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Beginner's bioinformatics books for someone without any knowledge in biology?
A former advisor of mine wrote this up a bit ago and I felt it was solid (also a CS major but did some bio work and his text was written with that in mind). https://github.com/zaneveld/full_spectrum_bioinformatics
What are some alternatives?
When comparing amazon-genomics-cli-demos and full_spectrum_bioinformatics you can also consider the following projects:
awscurl - curl-like access to AWS resources with AWS Signature Version 4 request signing.
poly - A Go package for engineering organisms.
amazon-genomics-cli
pydna - Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
ermineR - R wrapper for ermineJ
virnet - VirNet: A deep attention model for viral reads identification
Hail - Cloud-native genomic dataframes and batch computing