alevin-fry
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding. (by COMBINE-lab)
AreWeRustYet
Awesome list of "Are We *thing* Yet" for Rust (by UgurcanAkkok)
alevin-fry | AreWeRustYet | |
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3 | 8 | |
152 | 489 | |
4.6% | - | |
7.2 | 3.8 | |
2 months ago | 8 months ago | |
Rust | ||
BSD 3-clause "New" or "Revised" License | Creative Commons Zero v1.0 Universal |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
alevin-fry
Posts with mentions or reviews of alevin-fry.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-12-01.
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RNA VELOCITY
You can also get this information easily from the raw data using our alevin-fry tool. It produces a count matrix with spliced/unspliced/ambiguous counts that can easily be imported into python or R for velocity analysis. You can read more about alevin-fry here and check it out on github here. It's also easily installable via bioconda, and there's even a tool to simplify execution, called simpleaf. I'm happy to answer any questions you might have about using it!
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"Surpassing" Go & the near-future of Rust: in what domains will Rust succeed?
I think it depends on where in the space one is working. Our most recent tool, for example, is alevin-fry, which is for efficient preprocessing of single cell RNA seq data. Rust is the natural replacement for tools in the space that otherwise would have been in C++ (aligners, assemblers, large scale indexing, and things like RNA seq quantification and preprocessing). I view julia as more appropriate to replace tools currently existing in Python or R. There, I believe it can offer some substantial benefits. For our applications however, garbage collection is usually a non-starter.
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Our lab did a thing in rust (single-cell bioinformatics)
My lab has been trying to move most of our development over to rust (from C++). Our most recent paper presents a tool for single-cell and single-nucleus RNA-seq processing in rust https://rdcu.be/cIL35. The repo is https://github.com/COMBINE-lab/alevin-fry. It's one of our first "big" rust packages; so hopefully our design practices and rust skills will continue to improve.
AreWeRustYet
Posts with mentions or reviews of AreWeRustYet.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-03-16.
- Rust – Are We Game Yet?
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"Surpassing" Go & the near-future of Rust: in what domains will Rust succeed?
This is fascinating to me. It's my understanding that Rust is generally a system programming language, whereas Go is general-purpose... and what's more, it's up against the likes of C. But in spite of this, Rust is very clearly establishing a presence in most mainstream domains.
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Expanded standard/promoted libraries?
Btw i use any of many areweyet projects to figure out the most popular crate by github repo stars.
- AreWeRustYet – a list of Are We THING Yet sites
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I'm considering Rust, Go, or Julia for my next language and I'd like to hear your thoughts on these
For more info about how stable things are: https://github.com/UgurcanAkkok/AreWeRustYet
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Maybe We Can Have Nice Things
There are compilations of these websites like https://github.com/UgurcanAkkok/AreWeRustYet And I'm sure there are others.
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Looking for advice on Path to Rust Developer Job
Depending on your favorite area (gaming, web, ML/AI, backend, etc) perhaps take a look at this list of sites https://github.com/UgurcanAkkok/AreWeRustYet and pick some. Get familiar with your favorite projects, contribute, and build a code portfolio.