porcupine-core
Express parametrable, composable and portable data pipelines (by YPares)
bionix
Functional highly reproducible bioinformatics pipelines (by PapenfussLab)
| porcupine-core | bionix | |
|---|---|---|
| 1 | 1 | |
| 90 | 74 | |
| - | - | |
| 0.0 | 3.7 | |
| about 2 years ago | 5 months ago | |
| Haskell | Nix | |
| MIT License | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
porcupine-core
Posts with mentions or reviews of porcupine-core.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-03.
-
Experiences with workflow managers implemented in Haskell (funflow, porcupine, bioshake, ?)
Porcupine: https://github.com/tweag/porcupine
bionix
Posts with mentions or reviews of bionix.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-10-03.
-
Experiences with workflow managers implemented in Haskell (funflow, porcupine, bioshake, ?)
I wasn't satisfied with this and wanted the software to be managed too, so we ended up working on BioNix (https://github.com/PapenfussLab/bionix) which does both pipeline execution and software management. This is nice because it makes everything extremely reproducible and removes a lot of the pain of dealing with setting up software etc at various HPC facilities. The down side is Nix isn't typed, so the typing aspect of bioshake was ported on the back of a ADT implementation in Nix, and at least for my work it has caught a fair few mistakes. Of course this isn't Haskell so it doesn't satisfy your criteria, just though it's worth a mention.
What are some alternatives?
When comparing porcupine-core and bionix you can also consider the following projects:
funflow - Functional workflows
awesome-pipeline - A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
postgrest - REST API for any Postgres database