bracer vs BASIC

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data (by Teichlab)

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BASIC

BASIC: BCR and TCR assembly from single cell RNA-seq (by akds)

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ttic.uchicago.edu

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bracer		BASIC
	Project
2	Mentions	1
37	Stars	8
-	Growth	-
7.3	Activity	10.0
about 2 months ago	Latest Commit	almost 5 years ago
Python	Language	Python
GNU General Public License v3.0 or later	License	-

The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

bracer

Posts with mentions or reviews of bracer. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-03-11.

If you’re going to publish a tool, please actively maintain it, put up a hiatus notice, or discontinue it. . .
3 projects | /r/bioinformatics | 11 Mar 2022

A perfect example of Nature Methods bit is bracer. I was so stoked they released it because it basically solved all the problems I was trying to do with an analysis. Couldn't get it installed for the life of me and no response from GitHub issues. Tried conda. Tried installing everything manually. Good thing TRUST4 was around to save the day and the maintainer was really responsive whenever I had questions.
Any packages recommended for reconstruction of B cell receptor sequences from single-cell RNA-seq data?
2 projects | /r/bioinformatics | 21 Dec 2021

I've been trying to install BraCeR but I can't get the dependencies to work together. Any other tools recommended?

BASIC

Posts with mentions or reviews of BASIC. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-21.

Any packages recommended for reconstruction of B cell receptor sequences from single-cell RNA-seq data?
2 projects | /r/bioinformatics | 21 Dec 2021

I also found BASIC but it looks like it has its own assembly algorithm which I'm not a very big fan of when there are very well established assemblers out there.