PyDESeq2
py-shiny
| PyDESeq2 | py-shiny | |
|---|---|---|
| 2 | 29 | |
| 515 | 968 | |
| 3.5% | 5.8% | |
| 8.4 | 9.7 | |
| 7 days ago | 6 days ago | |
| Python | Python | |
| MIT License | MIT License |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
PyDESeq2
-
DESeq2 Normalization
https://github.com/owkin/PyDESeq2/blob/main/pydeseq2/preprocessing.py I'm not sure but only a normalized count matrix seems not enough to do differential expression analysis. For example, in this script, it gathers also the size factor from the raw read count matrix. Maybe you could find it somewhere or recalculate it.
-
When would you use R instead of Python?
PyDESeq2? https://github.com/owkin/PyDESeq2
py-shiny
-
Designing a Pure Python Web Framework
I really like this idea of using Python to create both the frontend and backend. Another lib doing this is https://solara.dev/ . Something I particularly like about Solara is that you can interactively build your app in a Jupyter Notebook, since behind the scenes it's using ipywidgets.
Has anyone compared Solara and Reflex and can comment on pros/cons? Are there other options in this space? Maybe https://shiny.posit.co/py/ ?
-
FastUI: Build Better UIs Faster
Would you consider giving Shiny (for Python) a try? https://shiny.posit.co/py/ It's (I hope) pretty close to Streamlit in ease of use for getting started, but reactive programming runs all the way through it. The kind of app you're talking about are extremely natural to write in Shiny, you don't have to keep track of state yourself at all.
If you decide to give it a try and have trouble, please email me (email in profile) or drop by the Discord (https://discord.gg/yMGCamUMnS).
-
py-shiny VS solara - a user suggested alternative
2 projects | 13 Oct 2023
-
Duckdb + Shiny for Python example
Code is here: https://github.com/rstudio/py-shiny/tree/duckdb-example/examples/duckdb
-
Transitioning from R to Python - any tips?
The equivalent of shiny in python is shiny for python: https://shiny.posit.co/py/
- Show HN: Mercury – convert Jupyter Notebooks to Web Apps without code rewriting
- Shiny for Python – building interactive web apps from Python
- Shiny – Web Pages in Python
-
Tidyverse 2.0.0
I'm not sure how usable it is, but Shiny for Python exists: https://shiny.rstudio.com/py/
-
Graphs in Python web app
There's Shiny for Python - originally for R - but it's only Alpha status: https://shiny.rstudio.com/py/
What are some alternatives?
rnaseq - RNA-seq analyses.
Solara - A Pure Python, React-style Framework for Scaling Your Jupyter and Web Apps
scanpy - Single-cell analysis in Python. Scales to >1M cells.
pyvibe - Generate styled HTML pages from Python
diffexpr - Porting DESeq2 into python via rpy2
Genie.jl - 🧞The highly productive Julia web framework
zarp - The Zavolab Automated RNA-seq Pipeline
Tidier.jl - Meta-package for data analysis in Julia, modeled after the R tidyverse.
React - The library for web and native user interfaces.
streamlit - Streamlit — A faster way to build and share data apps.
pyodide - Pyodide is a Python distribution for the browser and Node.js based on WebAssembly
S7 - S7: a new OO system for R