MultiQC
Sooty
| MultiQC | Sooty | |
|---|---|---|
| 5 | 1 | |
| 1,173 | 1,283 | |
| 1.5% | - | |
| 9.7 | 0.0 | |
| 5 days ago | 7 months ago | |
| JavaScript | Python | |
| GNU General Public License v3.0 only | GNU General Public License v3.0 only |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
MultiQC
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R pipelines for bulk RNA-seq analyses
fastp + multiQC + Salmon + DESeq2 all some nextflow workflow. It is a good exercise (not complicated) to create the pipeline from scratch the first time to properly understand each tool.
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RNA-seq analysis
I would recommend looking at the pages for FastQC and MultiQC. I run FastQC on my fastq files, then MultiQC on them to collect all that individual data into one report. You can also use MultiQC to analyze the quality of your alignments, at least after using STAR aligner (probably others too, I just have only used STAR aligned).
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How to use MultiQC? I am trying to run it to compile the summary from my FASTQC but I keep getting the "Sample has no read" error.
If that all checks out then I would have to see more of your files in order to help, sorry. Submitting the issue at https://github.com/ewels/MultiQC/issues would help you more
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How can I keep Docker MultiQC from ignoring my large files?
I have seen this Github thread, but it is not applicable for me because I am not running MultiQC natively, I am running a docker version of it in HPC.
Sooty
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A user has opened an attachment in a phishing email (MIME file, possibly .pdf). Our antivirus isn't finding anything, and there are no clear indications of compromise. We don't have a clear policy to respond to things like this. What would you do?
I haven't played with this yet, but it looks promising for trying to automate your OSINT when researching phishing emails: https://github.com/TheresAFewConors/Sooty
What are some alternatives?
finviz - Unofficial API for finviz.com
PhishingKitTracker - Let's track phishing kits to give to research community raw material to study !
awesome-single-cell - Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
spate - Quickly create workflows, business and process automation pipelines. Supports API, UI and Cron based workflows.
tm_calculator_gui - Calculates the melting temperature(in Celsius) of a user imported forward and reverse primer based on primer blast default parameters & pcr additives
Spoofy - Spoofy is a program that checks if a list of domains can be spoofed based on SPF and DMARC records.
pyrodigal - Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!
STARS - A multi-cloud DNS record scanner that aims to help cybersecurity/IT analysts identify dangling CNAME records in their cloud DNS services that could possibly lead to subdomain takeover scenarios.
Osintgram - Osintgram is a OSINT tool on Instagram. It offers an interactive shell to perform analysis on Instagram account of any users by its nickname
intelmq - IntelMQ is a solution for IT security teams for collecting and processing security feeds using a message queuing protocol.
Sniffles - Structural variation caller using third generation sequencing
cytoflow - A Python toolbox for quantitative, reproducible flow cytometry analysis