Gradient-Samples
SPOT-RNA
Gradient-Samples | SPOT-RNA | |
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- | 1 | |
61 | 86 | |
- | - | |
0.0 | 10.0 | |
over 1 year ago | over 1 year ago | |
C# | Perl | |
MIT License | Mozilla Public License 2.0 |
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Gradient-Samples
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SPOT-RNA
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Can I get dot-bracket notation from a .bpseq file?
Hello. I'm playing around with the tool SPOT-RNA which generates `.bpseq`, `.ct`, and `.prob` files when given a `.fasta` file. Optionally, I can pass the tool `--plots True` to generate image files of the secondary structure, but I actually just want a text version of the secondary structure in dot-bracket notation. Is there a way to derive this format from one of the output files? I'm pretty new to biology (my background is software engineering and CS) so if there's something obvious, it's over my head.
What are some alternatives?
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