Perl Deep Learning

Open-source Perl projects categorized as Deep Learning
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Topics: Machine Learning Tensorflow transfer-learning resnet rna
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Perl Deep Learning Projects

  • SPOT-RNA

    RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

    • Project mention: Can I get dot-bracket notation from a .bpseq file? | /r/bioinformatics | 2023-07-02

    Hello. I'm playing around with the tool SPOT-RNA which generates `.bpseq`, `.ct`, and `.prob` files when given a `.fasta` file. Optionally, I can pass the tool `--plots True` to generate image files of the secondary structure, but I actually just want a text version of the secondary structure in dot-bracket notation. Is there a way to derive this format from one of the output files? I'm pretty new to biology (my background is software engineering and CS) so if there's something obvious, it's over my head.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

Project Stars
1 SPOT-RNA 86

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