SPOT-RNA Alternatives
Similar projects and alternatives to SPOT-RNA
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jax-resnet
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SaaSHub
SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives
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The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better SPOT-RNA alternative or higher similarity.
SPOT-RNA reviews and mentions
Posts with mentions or reviews of SPOT-RNA.
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Can I get dot-bracket notation from a .bpseq file?
Hello. I'm playing around with the tool SPOT-RNA which generates `.bpseq`, `.ct`, and `.prob` files when given a `.fasta` file. Optionally, I can pass the tool `--plots True` to generate image files of the secondary structure, but I actually just want a text version of the secondary structure in dot-bracket notation. Is there a way to derive this format from one of the output files? I'm pretty new to biology (my background is software engineering and CS) so if there's something obvious, it's over my head.
Stats
Basic SPOT-RNA repo stats
1
86
10.0
over 1 year ago
jaswindersingh2/SPOT-RNA is an open source project licensed under Mozilla Public License 2.0 which is an OSI approved license.
The primary programming language of SPOT-RNA is Perl.
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