Augustus
Genome annotation with AUGUSTUS (by Gaius-Augustus)
htm.core
Actively developed Hierarchical Temporal Memory (HTM) community fork (continuation) of NuPIC. Implementation for C++ and Python (by htm-community)
Augustus | htm.core | |
---|---|---|
1 | 1 | |
265 | 145 | |
2.7% | 0.7% | |
5.0 | 4.4 | |
14 days ago | 3 months ago | |
C++ | C++ | |
- | GNU Affero General Public License v3.0 |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Augustus
Posts with mentions or reviews of Augustus.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-02-15.
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Cross-species functional annotation?
I use the Augustus tool to annotate a genome. You can give it a species to base the annotation model on. https://github.com/Gaius-Augustus/Augustus
htm.core
Posts with mentions or reviews of htm.core.
We have used some of these posts to build our list of alternatives
and similar projects.
-
How Computationally Complex Is a Single Neuron?
OK I am still parsing the pre-print, but their approach seems very interesting. And equally interesting would be to see what happens if you apply HTM [1] to the same inputs model, _e.g._:
> We next applied our paradigm to a morphologically and electrically complex detailed biophysical compartmental model of a 3D reconstructed layer 5 cortical pyramidal cell (L5PC) from rat somatosensory cortex (Fig. 2A). The model is equipped with complex nonlinear membrane properties, a somatic spike generation mechanism and an excitable apical nexus capable of generating calcium spikes
[1] https://github.com/htm-community/htm.core
What are some alternatives?
When comparing Augustus and htm.core you can also consider the following projects:
Liftoff - An accurate GFF3/GTF lift over pipeline
chess-deep-rl-cpp - C++ version of my chess-deep-rl project. WIP