EpiNow2
rstan
| EpiNow2 | rstan | |
|---|---|---|
| 1 | 8 | |
| 104 | 1,011 | |
| 1.9% | 1.4% | |
| 9.5 | 7.7 | |
| 3 days ago | 10 days ago | |
| R | R | |
| GNU General Public License v3.0 or later | - |
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
EpiNow2
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Reproduction numbers for the third wave
Someone asked for reproduction numbers for Nova Scotia right now so I thought I'd post some generated with the EpiNow2 package. Some explanation is probably required.
rstan
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R packages in Colab - either speed up install, or import library?
I have a Colab notebook with an R kernel that I'm using to share with students for remote lessons in statistics. This notebook relies on "rstanarm", which is pretty massive with the number of dependencies - it takes ~50minutes to install into a fresh Colab session with install.packages(). It seems the issue is that many of the dependencies of this package need to be compiled from source, which takes a long time on Linux distributions like Colab.
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Help troubleshooting a an error in a brms Regression
You need to install the preview version of rstan: https://github.com/stan-dev/rstan/wiki/Configuring-C---Toolchain-for-Windows
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Time series tutorial series
If you're on Windows, there are extra hoop to jump through, I'm afraid https://github.com/stan-dev/rstan/wiki/
- [S] Pyro/Numpyro or Stan for Bayesian modeling?
- Why does rstan depend on V8?
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Help with error running stan model using brms package
And here are the instructions on how to build RStan from source: https://github.com/stan-dev/rstan/wiki
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trouble installing rstan on mac
I ran the R code from here
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Looking to do Bayesian two-way ANOVA - can someone point me in the right direction?
In R, the rstanarm package should do you well. You'll need to install rstan and make sure you have a C++ complier set up as well (instructions here: https://github.com/stan-dev/rstan/wiki/RStan-Getting-Started)
What are some alternatives?
GreenPass-Experiments - It's possible to create a valid and fake green pass? The scope of this project is try to create one.
brms - brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
MultiBUGS - Multi-core BUGS for fast Bayesian inference of large hierarchical models
paramonte - ParaMonte: Parallel Monte Carlo and Machine Learning Library for Python, MATLAB, Fortran, C++, C.
stan - Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
LightGBM - A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.
vroom - Fast reading of delimited files
stanc3 - The Stan transpiler (from Stan to C++ and beyond).
r-macos-rtools - Scripts to build an **unofficial** Rtools-esq installer for the macOS R toolchain
wasmr - Execute WebAssembly from R using wasmer
Rblpapi - R package interfacing the Bloomberg API from https://www.bloomberglabs.com/api/
pdftools - Text Extraction, Rendering and Converting of PDF Documents