DNABERT
OOK_Audio
DNABERT | OOK_Audio | |
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1 | 13 | |
546 | 12 | |
- | - | |
3.1 | 10.0 | |
2 months ago | over 1 year ago | |
Python | Python | |
Apache License 2.0 | - |
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DNABERT
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[D] New to DNABERT
If I want to get started, they said it's optional to pre-train (so you can skip to step 3). This is where I got tripped up: "Note that the sequences are in kmer format, so you will need to convert your sequences into that." From what I understand, you need to do this so that all of the sequences are the same length? So kmer=6 means all of the sequences are length 6? Someone suggested that I take the first nucleotide in the promoter and grab 3 nucleotides before and 3 nucleotides after (+/-3 bases). I don't think that's how the kmer thing works though? I tried replicating how I think it works down below (I got confused on the last row of the 'after' df). Please correct me if I'm wrong!
OOK_Audio
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