DNABERT VS courses

Compare DNABERT vs courses and see what are their differences.

DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome (by jerryji1993)

courses

This repository is a curated collection of links to various courses and resources about Artificial Intelligence (AI) (by SkalskiP)
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DNABERT courses
1 7
546 4,573
- -
3.1 5.4
2 months ago 22 days ago
Python Python
Apache License 2.0 -
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DNABERT

Posts with mentions or reviews of DNABERT. We have used some of these posts to build our list of alternatives and similar projects.
  • [D] New to DNABERT
    1 project | /r/MachineLearning | 3 Nov 2023
    If I want to get started, they said it's optional to pre-train (so you can skip to step 3). This is where I got tripped up: "Note that the sequences are in kmer format, so you will need to convert your sequences into that." From what I understand, you need to do this so that all of the sequences are the same length? So kmer=6 means all of the sequences are length 6? Someone suggested that I take the first nucleotide in the promoter and grab 3 nucleotides before and 3 nucleotides after (+/-3 bases). I don't think that's how the kmer thing works though? I tried replicating how I think it works down below (I got confused on the last row of the 'after' df). Please correct me if I'm wrong!

courses

Posts with mentions or reviews of courses. We have used some of these posts to build our list of alternatives and similar projects.

What are some alternatives?

When comparing DNABERT and courses you can also consider the following projects:

Stanza - Stanford NLP Python library for tokenization, sentence segmentation, NER, and parsing of many human languages

course - The Hugging Face course on Transformers

datasets - 🤗 The largest hub of ready-to-use datasets for ML models with fast, easy-to-use and efficient data manipulation tools

WhereIsAI - AI company, product, and tool collection.

stanford-tensorflow-tutorials - This repository contains code examples for the Stanford's course: TensorFlow for Deep Learning Research.

vectory - Vectory provides a collection of tools to track and compare embedding versions.

spaCy - 💫 Industrial-strength Natural Language Processing (NLP) in Python

bearid - Hypraptive BearID project. FaceNet for bears.

nlp-recipes - Natural Language Processing Best Practices & Examples

Mask3D - Mask3D predicts accurate 3D semantic instances achieving state-of-the-art on ScanNet, ScanNet200, S3DIS and STPLS3D.

bioconvert - Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

wit - WIT (Wikipedia-based Image Text) Dataset is a large multimodal multilingual dataset comprising 37M+ image-text sets with 11M+ unique images across 100+ languages.