CNApy VS casq

Compare CNApy vs casq and see what are their differences.

CNApy

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more! (by cnapy-org)
metabolic-models constraint-programming Bioinformatics flux-balance-analysis sbml systems-biology computational-biology Cobra stoichiometric-modeling constraint-based-modeling constraint-based-analysis metabolic-reconstruction constraint-based-reconstruction metabolic-networks flux-variability metabolic-engineering fba fva
Source Code
cnapy-org.github.io
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casq

CaSQ: Celldesigner as Sbml-Qual [https://gitlab.inria.fr/soliman/casq/ mirror] (by soli)
sbml
Source Code
casq.readthedocs.io
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CNApy casq
1 1
41 2
- -
6.5 5.4
22 days ago about 2 months ago
Python Python
Apache License 2.0 GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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CNApy

Posts with mentions or reviews of CNApy. We have used some of these posts to build our list of alternatives and similar projects.
  • CNApy – An integrated environment for metabolic network analysis
    1 project | news.ycombinator.com | 19 Dec 2021
    CNApy is a desktop application for metabolic network analysis. It is a relative young project that aims to provide an integrated environment inspired by tools like CellNetAnalyser (CNA) and DD-DeCaf. In fact it started as a modernization of the CNA UI that allows to use functions from the CNA toolbox. CNApy is implemented in Python and uses Qt for the UI. Under the hood it uses COBRApy to implement the core model.

    The project has matured a lot and in the future we would love this project to be sustained on the basis of a broader community.

    Anyone that wants to get involved in the project, please let us know! We are looking for all kinds of contributions.

    Links:

    - [Project page on GitHub](https://github.com/cnapy-org/CNApy)

    - [CONTRIBUTING.md](https://github.com/cnapy-org/CNApy/blob/master/CONTRIBUTING....)

casq

Posts with mentions or reviews of casq. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-07-12.

What are some alternatives?

When comparing CNApy and casq you can also consider the following projects:

dash-cytoscape - Interactive network visualization in Python and Dash, powered by Cytoscape.js

BioModelAnalyzer - BioModelAnalyzer is a user-friendly tool for constructing biological models and verifying them

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

Clairvoyante - Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

biotite - A comprehensive library for computational molecular biology

CNApy vs dash-cytoscape casq vs BioModelAnalyzer CNApy vs metaGEM CNApy vs Clairvoyante CNApy vs biotite