single-cell-genomics

Open-source projects categorized as single-cell-genomics
Edit details
Language: + R + Python + Jupyter Notebook + Dockerfile
Topics: human-cell-atlas single-cell-rna-seq scrna-seq single-cell Deep Learning
Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
featured

Top 5 single-cell-genomic Open-Source Projects

  • seurat

    R toolkit for single cell genomics

    • Project mention: Help with spatial transcriptomic analysis | /r/bioinformatics | 2023-12-09

  • scvi-tools

    Deep probabilistic analysis of single-cell and spatial omics data

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • scarches

    Reference mapping for single-cell genomics

  • seurat-docker

    Docker images of Seurat

  • single-cell-transcriptomics-app

    A R Shiny App for single-cell analysis

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

    SaaSHub logo
NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

single-cell-genomics related posts

  • Help with spatial transcriptomic analysis

    1 project | /r/bioinformatics | 9 Dec 2023

  • Seurat installation issues on macbook (for RNA-seq analysis)

    1 project | /r/bioinformatics | 7 Dec 2023

  • Does Seurat provide any advantage for UMAPs over other packages (e.g. uwot)?

    1 project | /r/bioinformatics | 8 Mar 2023

  • Weird Phishing attempt on GitHub

    1 project | dev.to | 29 Dec 2022

  • I feel like nobody knows anything about what they're doing (including me) and it's making me think twice about working in bioinformatics. Is it a bioinformatics problem or is it a lab problem?

    1 project | /r/bioinformatics | 7 Dec 2022

  • Error with scvi

    2 projects | /r/bioinformatics | 3 Oct 2022

  • Use of Seurat integrated assay

    2 projects | /r/bioinformatics | 6 Feb 2022
  • A note from our sponsor - InfluxDB
    www.influxdata.com | 6 May 2024
    Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality. Learn more →

Index

What are some of the best open-source single-cell-genomic projects? This list will help you:

Project Stars
1 seurat 2,125
2 scvi-tools 1,131
3 scarches 310
4 seurat-docker 4
5 single-cell-transcriptomics-app 0

Sponsored
SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com