single-cell-analysis

Open-source projects categorized as single-cell-analysis
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Language: + Haskell + Jupyter Notebook + Dockerfile + R
Topics: single-cell single-cell-rna-seq single-cell-genomics single-cell-omics data-archive
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featured

Top 4 single-cell-analysis Open-Source Projects

  • too-many-cells

    Cluster single cells and analyze cell clade relationships with colorful visualizations.

  • gEAR

    The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more. (by IGS)

    • Project mention: How can I read single cell data into scanpy? txt files | /r/bioinformatics | 2023-06-23

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo

  • seurat-docker

    Docker images of Seurat

  • single-cell-transcriptomics-app

    A R Shiny App for single-cell analysis

NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

What are some of the best open-source single-cell-analysis projects? This list will help you:

Project Stars
1 too-many-cells 100
2 gEAR 10
3 seurat-docker 4
4 single-cell-transcriptomics-app 0

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