orf-finder

Open-source projects categorized as orf-finder
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Language: + Cython + Python
Topics: Bioinformatics Python prodigal cython-wrapper python-interface
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orf-finder Open-Source Projects

  • pyrodigal

    Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. Now with SIMD!

    • Project mention: DNA to amino acid sequence? | /r/bioinformatics | 2023-06-19

    True! I believe bakta relies on this python implementation of prodigal for translation https://github.com/althonos/pyrodigal

  • orfipy

    Fast and flexible ORF finder

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

Project Stars
1 pyrodigal 122
2 orfipy 46

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