Neuroimaging

Open-source projects categorized as Neuroimaging
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Topics: Python neuroscience mri brain-imaging medical-imaging
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Top 11 Neuroimaging Open-Source Projects

  • dcm2niix

    dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC

  • NIPY

    Workflows and interfaces for neuroimaging packages

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  • braindecode

    Deep learning software to decode EEG, ECG or MEG signals

  • dipy

    DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

  • fmriprep

    fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

  • Neuromorphic-Computing-Guide

    Learn about the Neumorphic engineering process of creating large-scale integration (VLSI) systems containing electronic analog circuits to mimic neuro-biological architectures.

  • brainchop

    Brainchop: In-browser 3D MRI rendering and segmentation

    • Project mention: Release Radar • March 2024 Edition | dev.to | 2024-04-07

    We featured Brainchop back in the February 2023 Release Radar. Since then, Brainchop is back with a powerful model update. Brainchop is a 3D MRI rendering and segmentation tool for analysing and processing Magnetic Resonance Imaging (MRIs) of various brains. Using AI, the new version features three classes of models for processing and analysing images of brains. Here are the three new models:

  • SaaSHub

    SaaSHub - Software Alternatives and Reviews. SaaSHub helps you find the best software and product alternatives

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  • Homer3

    MATLAB application for fNIRS data processing and visualization

  • BioExplorer

    The Blue Brain BioExplorer (BBBE) is a tool for data visualization experts and scientists to extract and analyze scientific data from visualization and interactive exploration

  • brainconn

    Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D

  • fusion

    The simplest way to do brain and behaviour research - right in your browser or mobile phone. Discord: https://discord.gg/sqsuzXWE3K (by NEUROFUSIONInc)

    • Project mention: Embracing "Organized Chaos" – Fusion is now open source | news.ycombinator.com | 2023-11-01
NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Neuroimaging related posts

  • [D] [P] Need help in my Thesis project "A comparison study of EEG analysis by Deep Learning vs Expert board cerrtified Neurologist analysis for 100 patient data

    2 projects | /r/deeplearning | 3 May 2023

Index

What are some of the best open-source Neuroimaging projects? This list will help you:

Project Stars
1 dcm2niix 807
2 NIPY 733
3 braindecode 706
4 dipy 669
5 fmriprep 602
6 Neuromorphic-Computing-Guide 249
7 brainchop 229
8 Homer3 81
9 BioExplorer 62
10 brainconn 36
11 fusion 30

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