gatk4

Open-source projects categorized as gatk4
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Language: + Nextflow + Python
Topics: Workflow germline somatic Conda Annotation
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gatk4 Open-Source Projects

  • sarek

    Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  • GermlineMutationCalling

    An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM files

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

gatk4 related posts

  • [Tool] Germline variant calling pipeline using Snakemake

    1 project | /r/bioinformatics | 20 Sep 2021

Index

Project Stars
1 sarek 340
2 GermlineMutationCalling 12

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