bioimage-analysis

Open-source projects categorized as bioimage-analysis
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Topics: Deep Learning vqvae Python mahmoodlab pathology
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bioimage-analysis Open-Source Projects

  • stardist

    StarDist - Object Detection with Star-convex Shapes

    • Project mention: Measuring size of nuclear puncta | /r/ImageJ | 2023-06-19

    Use StarDist! I am using it to solve a problem similar to yours, and it works great. DM if you need help.

  • SISH

    Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering (by mahmoodlab)

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

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NOTE: The open source projects on this list are ordered by number of github stars. The number of mentions indicates repo mentiontions in the last 12 Months or since we started tracking (Dec 2020).

Index

Project Stars
1 stardist 805
2 SISH 89

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