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SaaSHub
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SigProfilerExtractor
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sv-callers reviews and mentions
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Do you know how to get CNVs out of WES data sorted.bam files? (Free)
Generally, you have multiple ways to tackle this kind of a problem. For short read sequencing you have two types of CNV detection - readdepth based and paired-end based. CNVpytor (CNVnator) for example, is the former. You also have manta and lumpy. A lot of good pipelines use more than one SV caller and integrate them. For example: https://github.com/GooglingTheCancerGenome/sv-callers
Stats
GooglingTheCancerGenome/sv-callers is an open source project licensed under Apache License 2.0 which is an OSI approved license.
The primary programming language of sv-callers is Python.
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