genopype

Architecture for creating bash pipelines, in particular, for bioinformatics (by jolespin)

Genopype Alternatives

Similar projects and alternatives to genopype

NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a better genopype alternative or higher similarity.

genopype reviews and mentions

Posts with mentions or reviews of genopype. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-10-26.
  • Alternatives to nextflow?
    6 projects | /r/bioinformatics | 26 Oct 2022
    I wrote a package for my needs called GenoPype that is basically what you're describing. https://github.com/jolespin/genopype I don't claim that it's better software than Snakemake or Nextflow, I just developed something that works for exactly what I need it to do in creating log files, intermediate directories, checkpoints, i/o checks, acceptable return codes, etc.

Stats

Basic genopype repo stats
1
2
2.6
12 months ago

jolespin/genopype is an open source project licensed under BSD 3-clause "New" or "Revised" License which is an OSI approved license.

The primary programming language of genopype is Python.


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