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Bed-reader Alternatives
Similar projects and alternatives to bed-reader
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WorkOS
The modern identity platform for B2B SaaS. The APIs are flexible and easy-to-use, supporting authentication, user identity, and complex enterprise features like SSO and SCIM provisioning.
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a better bed-reader alternative or higher similarity.
bed-reader reviews and mentions
Posts with mentions or reviews of bed-reader.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2022-10-10.
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anyinput -- proc macro to easily create functions that accept any type of string-, path-, iterator-, or array-like inputs
I have trouble remembering the direct syntax for iterators and arrays. So, the macro is especially useful using when nesting inside them. For example, in the bed-reader genomics crate, I was apply to replace dozens of functions like:
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Can I count on LLVM optimizing away simple clone calls?
I'm creating a genomics-related crate. When a user asks for a field of a struct, I clone it. If the field is never used again, then an optimizer could move instead of clone. Can I expect this to happen?
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Trying to make a nice, elegant Rust API for the Bed-Reader Genomics Tool
Thanks! That works great and is now checked in.
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Is there a crate to download files when needed (using, say, SHA256)?
u/HeroicKatora, in Python I use Pooch to create a function called "sample_file" that returns the path to a sample file. (Behind the scenes, it downloads the file if needed). The function lets me write Python usage examples like this:
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Solution to: A puzzle: Any nice way to multithread work in order?
How much does this matter? Here are benchmarks from fastlmm/bed-reader at bed-writer (github.com):
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A puzzle: Any nice way to multithread work in order?
For our Bed-Reader open-source genomics tool, it would be great to speed up writing to a file. Writing is usually CPU-bound because each column of a big array (for example, 1M x 100) must be processed before output. A single-threaded, simplified writer is below and on the Rust Playground.
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Python extensions in Rust -- Lessons learned from upgrading a bioinformatics package
Thank you Rust & Rayon for letting Bed-Reader escape from C++/OpenMP runtime compatibility hell!
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A note from our sponsor - InfluxDB
www.influxdata.com | 26 Apr 2024
Stats
Basic bed-reader repo stats
8
66
9.4
9 days ago
fastlmm/bed-reader is an open source project licensed under Apache License 2.0 which is an OSI approved license.
The primary programming language of bed-reader is Rust.
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