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aws-genomics-workflows reviews and mentions
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Tips for scalable workflows on AWS
There are a lot of tools built with C/C++ using glibc shared libraries. The AWS CLI v2 is one of these tools. It is common for workflow engines running on AWS to bind mount the AWS CLI from the host instance into the container so that it is available for interacting with other AWS services like staging data from Amazon S3. Challenges arise when a tooling container is based on an image without glibc shared libraries as is the case with ultra-minimal base images like alpine and busybox. You can still use these ultra-minimal images, but you need to take extra steps to ensure that glibc shared libraries are available. For example, the AWS CLI v2 is distributed with the shared libraries it needs, and to make it work on an alpine based container, you can modify the LD_LIBRARY_PATH environment variable in the container environment to point to where these shared libraries are installed.
Stats
aws-samples/aws-genomics-workflows is an open source project licensed under MIT No Attribution which is not an OSI approved license.
The primary programming language of aws-genomics-workflows is Shell.
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