aws-genomics-workflows
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| aws-genomics-workflows | github-slug-action | |
|---|---|---|
| 1 | 1 | |
| 136 | 238 | |
| - | - | |
| 0.0 | 5.2 | |
| 9 months ago | 7 days ago | |
| Shell | Shell | |
| MIT No Attribution | MIT License |
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aws-genomics-workflows
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Tips for scalable workflows on AWS
There are a lot of tools built with C/C++ using glibc shared libraries. The AWS CLI v2 is one of these tools. It is common for workflow engines running on AWS to bind mount the AWS CLI from the host instance into the container so that it is available for interacting with other AWS services like staging data from Amazon S3. Challenges arise when a tooling container is based on an image without glibc shared libraries as is the case with ultra-minimal base images like alpine and busybox. You can still use these ultra-minimal images, but you need to take extra steps to ensure that glibc shared libraries are available. For example, the AWS CLI v2 is distributed with the shared libraries it needs, and to make it work on an alpine based container, you can modify the LD_LIBRARY_PATH environment variable in the container environment to point to where these shared libraries are installed.
github-slug-action
What are some alternatives?
htslib - C library for high-throughput sequencing data formats
tauri-action - Build your Web application as a Tauri binary for macOS, Linux and Windows
hello-github-actions - Create a GitHub Action and use it in a workflow.
fetch-api-data-action - 🚚 GitHub action for handling authenticated API requests, allowing you to save the data from the request into your workspace as an environment variable and a .json file.
aws-sdk - Landing page for the AWS SDKs on GitHub
expo-github-action - Expo GitHub Action makes it easy to automate EAS builds or updates
Image-Optimizer-Action - A Github Action to optimize / compress images in your repository
gulp-runner - Runs defined gulp tasks on push. 🥤🏃🏻
ci-workflows-flutter - Contains all CI Workflows for Flutter applications
jira-ci-cd-integration - Jira Integation for sending Build/Deploy information. Use with any CI/CD provider (via Docker)
OCR-PDF-Action - A GitHub action for turning scanned PDF's into searchable documents