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On an Arduino compatible platform the configuration of the baud rate at the bare metal layer is taken care of by the library when you call its begin() method. Looking at the example code included with the library it appears that there are no timer interrupts or anything like that required of you in order to use it. Another thing that jumps out is that the call to read() returns a non-zero value if anything has been received that you should use to predicate whether any further attention needs to be spent on it by your code. You may know this but it wasn't apparent from the loop() { MIDI.read\`() }` example that you gave above.