Many write research papers in R Markdown - What is the alternative setup in Python?

• sidenotes

  27 42 0.0 TypeScript

  Position floating sidenotes/comments next to a document with inline references.

  

You should look at Curvenote https://curvenote.com/ it's aimed specifically at that crazy copy-paste workflow you described. It adds some version control to the Juptyer notebook so you can link and update your figures. It's different from quarto in that you can use it on the command line or via a web-based editor and it extends Jupyter with some additional controls

• jupytext

  20 6,418 8.8 Python

  Jupyter Notebooks as Markdown Documents, Julia, Python or R scripts

Using jupytext (allows you to open .md files as notebooks) + jupyter gives you pretty much the same experience. The main issue is that the cell's output will be discarded. To fix it, you can use ploomber to generate an output HTML, so the workflow goes like this:

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• ploomber

  121 3,374 7.4 Python

  The fastest ⚡️ way to build data pipelines. Develop iteratively, deploy anywhere. ☁️

  

Using jupytext (allows you to open .md files as notebooks) + jupyter gives you pretty much the same experience. The main issue is that the cell's output will be discarded. To fix it, you can use ploomber to generate an output HTML, so the workflow goes like this:

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