python for bioinformatics

This page summarizes the projects mentioned and recommended in the original post on /r/bioinformatics

InfluxDB - Power Real-Time Data Analytics at Scale
Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
www.influxdata.com
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SaaSHub - Software Alternatives and Reviews
SaaSHub helps you find the best software and product alternatives
www.saashub.com
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  • rwrap

    Seamlessly integrate R packages into Python.

    • R? Python? why not both? https://github.com/kpj/rwrapthere are many wrappers on both sides. Programming language is a tool and it should be a matter of choice, not a restriction.

  • scvi-tools

    Deep probabilistic analysis of single-cell and spatial omics data

    • I use both but I prefere python, its much easier for huge datasets, and a lot of useful tools are only available on python: https://github.com/YosefLab/scvi-tools

  • InfluxDB

    Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.

    InfluxDB logo
NOTE: The number of mentions on this list indicates mentions on common posts plus user suggested alternatives. Hence, a higher number means a more popular project.

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