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InfluxDB
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While browsing this reddit, I found the 65C02-Tool (reddit, Github) written by user u/nectivio being what I was looking for! It features a very robust Monitor, clock generator / measurement, Peek, Poke, EEPROM Read and Write *from Arduino serial monitor UI* (can write from a single-byte up to a 64 bytes IIRC). Icing on the cake: you can program the whole EEPROM in one shot without removing it from the circuit!
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.