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I've used DVC in the past and generally liked its approach. That said, I wholeheartedly agree that it's clunky. It does a lot of things implicitly, which can make it hard to reason about. It was also extremely slow for medium-sized dataset (low 10s of GBs).
In response, I created a command-line tool that addresses these issues[0]. To reduce the comparison to an analogy: Dud : DVC :: Flask : Django.
[0]: https://github.com/kevin-hanselman/dud
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