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I'm building a consumer facing prompt manager (https://promptfolder.com/ - no API yet), but I've looked at most of the other tools... unfortunately I haven't seen anything that is a solid fit for what you're looking for.
You might want to contact the devs behind PromptPal (https://github.com/PromptPal/PromptPal), they seem to be some of the more technically advanced and fast moving people building in this area... maybe they can hack something together for you.
AIPRM is one of the more popular prompt managers, but as of May they don't have a public API (https://forum.aiprm.com/t/use-aiprm-prompt-templates-api/382...).
Maybe you can try https://flows.network/, which supports environment variables when creating an app. You can also manage the environment variables later with their UI. Click on https://flows.network/flow/createByTemplate/Telegram-ChatGPT, you can see you could set up system_prompt.
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