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eopegwas
Maternal Cardiovascular-Related Single Nucleotide Polymorphisms, Genes and Pathways Associated with Early-Onset Preeclampsia
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InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
a GWAS study we did on Early-Onset Preeclampsia where we had clinical and genomic data for 109 pregnant woman in Hawai'i, we put everything on GitHub.
[1] We created a grammar for the schema, which not only allowed us to double check the type safety of our data but then also synthesize a CSV [2] with one click and stick that in the repo so that reviewers/researchers could `git clone` the repo and reproduce everything without any permissions bottlenecks (obviously the results are gibberish with the synth data, and you have to contact us to get the real data, but this way you can get the code working and then it's just a simple file move to reproduce the full results). This is the way.
[1] https://github.com/breckuh/eopegwas/blob/master/eopClinicalS...
[2] https://github.com/breckuh/eopegwas/blob/master/mockData/cli...