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the config that I used in that part is here: https://github.com/martibosch/snakemacs/blob/code-cells-org/main.el
code-cells and ox-ipynb are different tools, what should be compared is jupytext to ox-ipynb. I actually did that when I was writing the post but I did not include it. Basically, the advantage of jupytext is that it offers very solid round trip conversion whereas ox-ipynb only offers org to ipynb conversion. The advantage of ox-ipynb is that it lets you keep the outputs (which for me is also a very important point). Hopefully, outputs will be supported in jupytext at some point (https://github.com/mwouts/nbpercent/). Of course there is also pandoc, which supports round trip conversion and many more formats but like jupytext it removes the outputs.
Also wanted to note another option for python scripts, https://github.com/abo-abo/lpy (that uses lispy). Lispy seems to be actively maintained and lpy is less (abo-abo doesn't seem to be active anymore). There are a few drawbacks, specifically around async evaluation but it's a very interesting option, and with a little more maintenance of the package is even great.