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The issue is that that query only returns the associated pull request for MERGED pull requests only. For example, if we look at this pull request for numpy (https://github.com/numpy/numpy/pull/23753/commits), we can see that it is merged, and it has one associated commit (with hash 725777de1b8dea22edf9421a47ccf0807b477ae7). Specifying that hash along with the repo name and owner in my GraphQL query above correctly returns the corresponding pull request (#23753). However, here is a pull request that is not merged (https://github.com/numpy/numpy/pull/23751/commits). It has 1 commit (ab2bd9d9b997a315d2c4e3175ba03ab3a435543d), just like the other pull request. But this time, when we pass that commit in the GraphQL query above, the list of associated pull requests that the query returns is empty, despite that commit hash clearly being associated with a pull request.