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So as a first step you'll want to profile your program to figure out where it's slow, and hopefully that'll also tell you why it's slow. I'm the (biased) author of the Sciagraph profiler which is designed for this sort of application (https://sciagraph.com) but you can also try py-spy, which isn't as well designed for data processing/analysis applications (e.g. it won't visualize parallelism at all) but can still be informative (https://github.com/benfred/py-spy). Both are written in Rust ;)
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.