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oh look at something like the rust package manager cargo https://doc.rust-lang.org/cargo/ there so much stuff in there specific to rust.
>> Why could't PIP just be an apt-extension?
Because not eveyone uses an apt-based package manager.
Python runs on quite a few platforms:
https://github.com/python/cpython/blob/main/Lib/platform.py
Apt is not the package manager for most of those platforms. Thus an operating system package manager-based approach would not work for everyone.
That said, several operating systems do "vendor" pip packages so that apt or the equivalent operating system package manager can install a known good version of the package. This approach can introduce problems, but it also can prevent problems depending on the operating system and programming language.