-
InfluxDB
Power Real-Time Data Analytics at Scale. Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
Maybe using barrnap (https://github.com/tseemann/barrnap) to detect any E. coli 16S-rRNA?
If you've got a fast solid state drive with >200G of space, then kraken2 + bracken works really well. First, use kraken2 to map reads to taxa in memory-mapped mode (to reduce system memory consumption):
NOTE:
The number of mentions on this list indicates mentions on common posts plus user suggested alternatives.
Hence, a higher number means a more popular project.