webR-quarto-demos
workflowr
| webR-quarto-demos | workflowr | |
|---|---|---|
| 1 | 2 | |
| 68 | 810 | |
| - | 1.2% | |
| 3.8 | 5.4 | |
| about 1 year ago | 3 months ago | |
| HTML | R | |
| - | GNU General Public License v3.0 or later |
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webR-quarto-demos
workflowr
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How do you manage results, plots, etc.?
I would start by saying "bioinformatics world" is a very broad term. Most of it does not involve managing multiple models, which is what MLflow seems to be for. Most work is cleaning the data and interpreting the results, which is highly project-specific. Something like workflowr is generally more appropriate, but even that is an overkill for most people.
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Restructuring a large R project. Need advice on how to wire up file paths and associated objects.
Targets stores all your data serialised on disk, and only loads them in as needed by the dependencies. For a standardised folder structure, you can take inspiration from workflowr.
What are some alternatives?
hugo-blox-builder - 🚨 GROW YOUR AUDIENCE WITH HUGOBLOX! 🚀 HugoBlox is an easy, fast no-code website builder for researchers, entrepreneurs, data scientists, and developers. Build stunning sites in minutes. 适合研究人员、企业家、数据科学家和开发者的简单快速无代码网站构建器。用拖放功能、可定制模板和内置SEO工具快速创建精美网站！
targets - Function-oriented Make-like declarative workflows for R
oauth-tutorial - Like GitHub Pages, but you choose who can see it without usernames & passwords.
box - Write reusable, composable and modular R code
FielDHub - FielDHub is an R Shiny design of experiments (DOE) app that aids in the creation of traditional, unreplicated, augmented and partially replicated (p-rep) designs applied to agriculture, plant breeding, forestry, animal and biological sciences.
targets-minimal - A minimal example data analysis project with the targets R package
qcoder - Lightweight package to do qualitative coding
blogdown - Create Blogs and Websites with R Markdown
vembedr - Functions to Embed Video in HTML
reprex - Render bits of R code for sharing, e.g., on GitHub or StackOverflow.
data-science-development-project-template - A logical, reasonably standardized, but flexible project structure for doing and sharing data science research work while developing a software tool.
namer - R package :package: for labelling chunks of RMarkdown files! :boom: