virnet VS VirusSeeker-Virome

Compare virnet vs VirusSeeker-Virome and see what are their differences.

virnet

VirNet: A deep attention model for viral reads identification (by alyosama)
Bioinformatics metagenomics Deep Learning Lstm Python Keras
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VirusSeeker-Virome

VirusSeeker is a set of fully automated and modular software package designed for mining sequence data to identify sequences of microbial origin. (by guoyanzhao)
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virnet VirusSeeker-Virome
1 1
29 16
- -
0.0 10.0
over 2 years ago over 6 years ago
Jupyter Notebook Perl
Apache License 2.0 GNU General Public License v3.0 only
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

virnet

Posts with mentions or reviews of virnet. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.
  • Bad tools that NEED improvement
    11 projects | /r/bioinformatics | 18 Dec 2021
    VirNet: several issues with their dependencies not being available. For fun, you have to read the issue opened on their "requirments.txt". Pointed out bad dependencies, and mentioned that the file "requirments.txt" was mispelled and so didn't match the README. They updated the README to reflect the mispelling, left the bad file name and bad dependencies, and closed the issue.

VirusSeeker-Virome

Posts with mentions or reviews of VirusSeeker-Virome. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-12-18.
  • Bad tools that NEED improvement
    11 projects | /r/bioinformatics | 18 Dec 2021
    VirusSeeker: no installation or running instructions on GitHub. They do have it on their lab website, but you have to edit source files to point to databases. Too much of a pain. So not sure how it works once that is done.

What are some alternatives?

When comparing virnet and VirusSeeker-Virome you can also consider the following projects:

PhaMers - A bioinformatic tool for identifying bacteriophages using machine learning and k-mers

virMine

metaGEM - :gem: An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data

DeePhage - A tool for distinguish temperate phage-derived and virulent phage-derived sequence in metavirome data using deep learning

PPR-Meta - A tool for identifying phages and plasmids from metagenomic fragments using deep learning

MetaRon - Metagenomic opeRon Prediction pipeline. MetaRon presents the first pipeline for the prediction of metagenomic operons without any functional or experimental data.

Cenote_Unlimited_Breadsticks - DEPRECATED: Discover divergent virus sequences, prune flanking cellular sequences, make basic report

virnet vs PhaMers VirusSeeker-Virome vs virMine virnet vs metaGEM VirusSeeker-Virome vs DeePhage virnet vs PPR-Meta VirusSeeker-Virome vs PhaMers virnet vs MetaRon VirusSeeker-Virome vs PPR-Meta virnet vs Cenote_Unlimited_Breadsticks VirusSeeker-Virome vs metaGEM virnet vs DeePhage VirusSeeker-Virome vs MetaRon