sqzlib VS minimap2

Compare sqzlib vs minimap2 and see what are their differences.

sqzlib

Blocked bases fastX encoding and compression (by 7PintsOfCherryGarcia)

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences (by 7PintsOfCherryGarcia)
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sqzlib minimap2
1 1
1 0
- -
4.7 1.8
12 months ago over 2 years ago
C C
MIT License GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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sqzlib

Posts with mentions or reviews of sqzlib. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-21.

minimap2

Posts with mentions or reviews of minimap2. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2021-11-21.
  • sqzlib - kseq compatible DNA fastA/Q encoding and compression library
    5 projects | /r/bioinformatics | 21 Nov 2021
    Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.

What are some alternatives?

When comparing sqzlib and minimap2 you can also consider the following projects:

bwa-mem2 - The next version of bwa-mem

Klib - A standalone and lightweight C library

bwa-mem2 - The next version of bwa-mem

seqstats - Quick summary statistics on fasta/fastq(.gz) files

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Get real-time insights from all types of time series data with InfluxDB. Ingest, query, and analyze billions of data points in real-time with unbounded cardinality.
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