minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences (by 7PintsOfCherryGarcia)
seqstats
Quick summary statistics on fasta/fastq(.gz) files (by 7PintsOfCherryGarcia)
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| minimap2 | seqstats | |
|---|---|---|
| 1 | 1 | |
| 0 | 0 | |
| - | - | |
| 1.8 | 1.8 | |
| over 2 years ago | over 2 years ago | |
| C | C | |
| GNU General Public License v3.0 or later | MIT License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
minimap2
Posts with mentions or reviews of minimap2.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-11-21.
-
sqzlib - kseq compatible DNA fastA/Q encoding and compression library
Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.
seqstats
Posts with mentions or reviews of seqstats.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2021-11-21.
-
sqzlib - kseq compatible DNA fastA/Q encoding and compression library
Most importantly, sqzlib is fully compatible with klib/kseq.h one of the highest performance fastA/Q parsers. This means that any application that uses kseq.h for fastA/Q parsing, can be easily modified to use sqzlib instead. You can find patched versions of seqstats, minimap2, and bwa-mem2 in my github, or you can patch them yourself with the included patches.
What are some alternatives?
When comparing minimap2 and seqstats you can also consider the following projects:
bwa-mem2 - The next version of bwa-mem
minimap2 - A versatile pairwise aligner for genomic and spliced nucleotide sequences
bwa-mem2 - The next version of bwa-mem
sqzlib - Blocked bases fastX encoding and compression
Klib - A standalone and lightweight C library