slivar
genetic variant expressions, annotation, and filtering for great good. (by brentp)
deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data. (by google)
| slivar | deepvariant | |
|---|---|---|
| 1 | 5 | |
| 275 | 3,724 | |
| 0.7% | 0.9% | |
| 5.4 | 9.1 | |
| about 1 month ago | 3 months ago | |
| Nim | Python | |
| MIT License | BSD 3-clause "New" or "Revised" License |
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
slivar
Posts with mentions or reviews of slivar.
We have used some of these posts to build our list of alternatives
and similar projects.
-
Help on installation of GEMINi
Looks like they’ve broken the install at some point. If you check the GitHub for Gemini it recommends you replace it with slivar https://github.com/brentp/slivar
deepvariant
Posts with mentions or reviews of deepvariant.
We have used some of these posts to build our list of alternatives
and similar projects. The last one was on 2023-05-06.
- Look over my purchase, is there anything I should return?
- Welche Berufe haben ein riesiges Angebot an Arbeitskräften (zb. Marketing) und welche Berufe haben wirklich echten Fachkräftemangel und brauchen dringend mehr öffentliche Plattform?
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Give me your suggestions for papers with a Convolutional Neural Network in Bioinformatics
See https://www.nature.com/articles/nbt.4235 for the paper and https://github.com/google/deepvariant for the code.
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[D] Is deep learning having an impact in life sciences yet?
Deepvariant is a another example.
What are some alternatives?
When comparing slivar and deepvariant you can also consider the following projects:
bwa - Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
scanpy - Single-cell analysis in Python. Scales to >100M cells.
rare-disease-wf - (WIP) best-practices workflow for rare disease
galaxy - Data intensive science for everyone.
open-cravat - A modular annotation tool for genomic variants
ariba - Antimicrobial Resistance Identification By Assembly