SeqAn VS libsais

Compare SeqAn vs libsais and see what are their differences.

SeqAn

SeqAn's official repository. (by seqan)
Biology Cpp14 Bioinfomatics High Performance Simd sequence-alignments Alignment Bwt Indexing Suffixarray Htslib sam-bam Fasta fastq-format Blast Seqan
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seqan.de
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libsais

libsais is a library for linear time suffix array, longest common prefix array and burrows wheeler transform construction based on induced sorting algorithm. (by IlyaGrebnov)
Bwt burrows-wheeler-transform saca suffix-array sais divsufsort Suffixarray lcp lcp-array longest-common-prefix parallel-suffix-array
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SeqAn libsais
- 1
457 165
2.0% -
7.3 5.8
17 days ago 7 days ago
C++ C
GNU General Public License v3.0 or later Apache License 2.0
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
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SeqAn

Posts with mentions or reviews of SeqAn. We have used some of these posts to build our list of alternatives and similar projects.

We haven't tracked posts mentioning SeqAn yet.
Tracking mentions began in Dec 2020.

libsais

Posts with mentions or reviews of libsais. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-03-09.
  • The Technical Workloads Where AMD Ryzen 9 7900X3D/7950X3D CPUs Are Excellent
    2 projects | /r/Amd | 9 Mar 2023
    The old engineered state of art was difsufsort but now there is libsais that makes use of prefetching (would be interesting to see how both react to huge caches). As for datasets, there are many classical ones. From rough order of size: Silesia Corpus, Manzini Corpus, Pizza&Chili Corpus, Large Text Compression Benchmark Corpus, etc.

What are some alternatives?

When comparing SeqAn and libsais you can also consider the following projects:

Vcflib - C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

wbz - A parallel implementation of the bzip2 data compressor in python, this data compression pipeline is using algorithms like Burrows–Wheeler transform (BWT) and Move to front (MTF) to improve the Huffman compression. For now, this tool only will be focused on compressing .csv files, and other files on tabular format.

libsequence - libsequence: a C++ class library for evolutionary genetic analysis

libdivsufsort - A lightweight suffix-sorting library

Wham - Structural variant detection and association testing

sdsl-lite - Succinct Data Structure Library 3.0

kanzi-cpp - Fast lossless data compression in C++

lzsa - Byte-aligned, efficient lossless packer that is optimized for fast decompression on 8-bit micros

cello - A string library

fstalign - An efficient OpenFST-based tool for calculating WER and aligning two transcript sequences.

tabulate - Table Maker for Modern C++

SeqAn vs Vcflib libsais vs wbz SeqAn vs libsequence libsais vs libdivsufsort SeqAn vs Wham libsais vs sdsl-lite SeqAn vs kanzi-cpp libsais vs lzsa SeqAn vs sdsl-lite libsais vs cello SeqAn vs fstalign SeqAn vs tabulate