sambamba VS genozip

Compare sambamba vs genozip and see what are their differences.

sambamba

Tools for working with SAM/BAM data (by biod)
Sam bam Bioinformatics
Source Code
thebird.nl
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genozip

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too (by divonlan)
Genomics Compression fastq Vcf bam Sam Fasta gvf 23andme Gzip bgzip Samtools bwa cram
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sambamba genozip
1 2
555 149
0.5% -
6.5 9.1
9 months ago about 1 month ago
D C
GNU General Public License v3.0 only GNU General Public License v3.0 or later
The number of mentions indicates the total number of mentions that we've tracked plus the number of user suggested alternatives.
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
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For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.

sambamba

Posts with mentions or reviews of sambamba. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2022-12-14.
  • where to start?
    3 projects | /r/bioinformatics | 14 Dec 2022
    Yeah the D programming language, https://dlang.org/ one of my favorite languages to program in. It's unfortunately not used a lot in bioinformatics, and deserves more attention in my opinion. E.g. sambamba for working with sam/bam files is written in it (https://github.com/biod/sambamba) it's one of the most performant tools for working with NGS data because it uses async io and fibers.

genozip

Posts with mentions or reviews of genozip. We have used some of these posts to build our list of alternatives and similar projects. The last one was on 2023-01-09.

What are some alternatives?

When comparing sambamba and genozip you can also consider the following projects:

bam-filter - Use simple expressions to filter a BAM/CRAM file

htslib - C library for high-throughput sequencing data formats

ruby-htslib - HTSlib bindings for Ruby

BEETL - BEETL

swirl - :cyclone: Learn R, in R.

snappy - Helps you browse through and interpret your genotype data

hts.cr - HTSlib bindings for Crystal

zstd - Zstandard - Fast real-time compression algorithm

dmd - dmd D Programming Language compiler

tamtools - Create and manage hybrid reference assemblies to consolidate two original DNA alignments against different reference assemblies.

sambamba vs bam-filter genozip vs htslib sambamba vs ruby-htslib genozip vs BEETL sambamba vs swirl genozip vs snappy sambamba vs hts.cr genozip vs zstd sambamba vs dmd genozip vs tamtools