quarto-cli
styles
quarto-cli | styles | |
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8 | 8 | |
3,304 | 3,168 | |
3.5% | 0.8% | |
10.0 | 9.3 | |
6 days ago | 4 days ago | |
JavaScript | Ruby | |
GNU General Public License v3.0 or later | - |
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quarto-cli
- FLaNK AI Weekly 18 March 2024
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Quarto
Hello, I have a rather specific question.
I want to write a detailed tutorial (as HTML page) and a condensed version of it (as Reveal JS slides) from a single document.
I have found this suggestion[1] to specify the separate output file name for the slides in the header, and `quarto render myfile.qmd` will generate both.
Is there a way to include content (long form text, code, or images) that will only be exported in the HTML page but not in the slides (where space is more limited)?
[1] https://github.com/quarto-dev/quarto-cli/discussions/1751
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Running Quarto Markdown in Docker
❯ docker build -t cavo789/quarto . [+] Building 208.2s (13/13) FINISHED docker:default => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 2.08kB 0.0s => [internal] load metadata for docker.io/eddelbuettel/r2u:20.04 3.4s => CACHED [ 1/10] FROM docker.io/eddelbuettel/r2u:20.04@sha256:133b40653e0ad564d348f94ad72c753b97fb28941c072e69bb6e03c3b8d6c06e 0.0s => [ 2/10] RUN set -e -x && apt-get update && apt-get install -y --no-install-recommends pandoc pandoc-citeproc curl gdebi-core librsvg2-bin python3.8 47.6s => [ 3/10] RUN set -e -x && install.r shiny jsonlite ggplot2 htmltools remotes renv knitr rmarkdown quarto 27.2s => [ 4/10] RUN set -e -x && curl -o quarto-linux-amd64.deb -L https://github.com/quarto-dev/quarto-cli/releases/download/v1.4.529/quarto-1.4.529-linux-amd64.deb && gdebi - 12.1s => [ 5/10] RUN set -e -x && groupadd -g 1000 -o "quarto" && useradd -m -u 1000 -g 1000 -o -s /bin/bash "quarto" 0.5s => [ 6/10] RUN set -e -x && quarto install tool tinytex --update-path 23.0s => [ 7/10] RUN set -e -x && printf "\e[0;105m%s\e[0;0m\n" "Run tlmgr update" && ~/.TinyTeX/bin/x86_64-linux/tlmgr update --self --all && ~/.TinyTeX/bin/x86_64-linux/fm 77.9s => [ 8/10] RUN set -e -x && printf "\e[0;105m%s\e[0;0m\n" "Run tlmgr install for a few tinyText packages (needed for PDF conversion)" && ~/.TinyTeX/bin/x86_64-linux/tlmgr 11.7s => [ 9/10] RUN set -e -x && mkdir -p /input 0.5s => exporting to image 4.0s => => exporting layers 4.0s => => writing image sha256:fe1d20bd71a66eb574ba1f5b35c988ace57c2c30f93159caa4d5de2f8c490eb0 0.0s => => naming to docker.io/cavo789/quarto 0.0s What's Next? View summary of image vulnerabilities and recommendations → docker scout quickview
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Quarto document rendered via quarto::quarto_render(): How to implement citations?
I had some trouble following this but I think what you're saying is the ` [@Bernhofer2021.02.23.432527]` tag isn't getting converted to the actual bib reference - is that right? I just copied this into my system and I could make that part work fine - using my own .bib file of course, and I used this csl which I copied locally. The one change I made to the setup was to put both the .bib and the .csl file in my working directory where the .qmd file is, and also as I commented on a different post of yours from the other day, I make sure there's no spaces in the path to my working directory (for either the folder names or the filenames). So for me, everything is in C:\Users\xxxx\workingdir - this is due to a known RStudio issue with spaces. Who knows if that's what you're running into or not.
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Quarto: Mermaid rendering in word: code-execution halts after format is generated, waiting indefinitely for a chrome-process to close
You should ask in the Quarto discussion group on their GitHub. They are extremely reactive if you can give a MWE.
- quarto-cli: Open-source scientific and technical publishing system built on Pandoc.
- The Jupyter+Git problem is now solved
styles
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Quarto document rendered via quarto::quarto_render(): How to implement citations?
I had some trouble following this but I think what you're saying is the ` [@Bernhofer2021.02.23.432527]` tag isn't getting converted to the actual bib reference - is that right? I just copied this into my system and I could make that part work fine - using my own .bib file of course, and I used this csl which I copied locally. The one change I made to the setup was to put both the .bib and the .csl file in my working directory where the .qmd file is, and also as I commented on a different post of yours from the other day, I make sure there's no spaces in the path to my working directory (for either the folder names or the filenames). So for me, everything is in C:\Users\xxxx\workingdir - this is due to a known RStudio issue with spaces. Who knows if that's what you're running into or not.
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URL in citation with org-cite?
Seems like in that case you need to use the csl export processor instead of the default basic -- see the instructions at https://ox-hugo.scripter.co/doc/org-cite-citations/. The default CSL style shipped with Org is Chicago author-date. For numbered citations you will need to use a different CSL style, for instance, ieee-with-url.
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Zotero or Mendeley? What's best to use with Obsidian?
Both should. See https://citationstyles.org/
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How can I export references with apa style using org-mode?
;; Currently only using csl (use-package oc-csl :after oc :init ;; make sure to download csl ;; https://citationstyles.org ;; https://github.com/citation-style-language ;; repos for styles & locales (setq org-cite-csl-styles-dir "~/path/to/csl/styles") (setq org-cite-csl-locales-dir "~/path/to/csl/locales")) ``` Make sure apa7 is part of the csl styles dir that you're setting. Then you just need this in your org document or referenced by that document:
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Zotero 6
You can use the BetterBibtex plugin to export the references to a bib or json file which can be ingested by Pandoc. There's an option to have it re-export the file every time you make a change to the library.
Citations work pretty well. You can customize the output with different CSL files [1].
[1] https://citationstyles.org/
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What is the reference style used in springer articles?
PS: i found out this link with many medley reference styles: https://github.com/citation-style-language/styles
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writing scientific paper in Rstudio only?
The bibliography.bib file is your exported bibtex file. The style.csl file is the citation style for the targeted journal (they can all be found here: https://github.com/citation-style-language/styles)
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Alfred Workflow for Pandoc
In addition, there are dozens of auxiliary features like searching & downloading citation styles from the Citation Style Repository or an "anticipatory" word count (i.e., calculating the word count a document would have when the bibliography has been added, a feature that virtually all markdown writing apps lack).
What are some alternatives?
jupyter-book - Create beautiful, publication-quality books and documents from computational content.
pandoc_alfred - Pandoc-Suite for Academic Writing in Markdown
ipyflow - A reactive Python kernel for Jupyter notebooks.
anystyle - Fast citation reference parsing
Pluto.jl - 🎈 Simple reactive notebooks for Julia
citeproc-el - A CSL 1.0.2 Citation Processor for Emacs.
jupyterlab-git - A Git extension for JupyterLab
zotero-standalone-build - Zotero client build utility
github-orgmode-tests - This is a test project where you can explore how github interprets Org-mode files
translators - Zotero Translators
jupyter - An interface to communicate with Jupyter kernels.
BibWord - Microsoft Word and Bibliography Styles extender.