pyvista
pymol-open-source
| pyvista | pymol-open-source | |
|---|---|---|
| 1 | 5 | |
| 2,360 | 1,031 | |
| 1.9% | 2.4% | |
| 9.8 | 7.8 | |
| 3 days ago | 22 days ago | |
| Python | C | |
| MIT License | GNU General Public License v3.0 or later |
Stars - the number of stars that a project has on GitHub. Growth - month over month growth in stars.
Activity is a relative number indicating how actively a project is being developed. Recent commits have higher weight than older ones.
For example, an activity of 9.0 indicates that a project is amongst the top 10% of the most actively developed projects that we are tracking.
pyvista
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Seeking library recommendation for 3D visualization of crystal structure
Two similar alternatives you could look at are PyVista which is based on the same framework as Mayavi and VisPy. Mayavi is strongly dependent on the whole Enthought suite which can be a disadvantage if you don’t really use its abilities.
pymol-open-source
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Seeking library recommendation for 3D visualization of crystal structure
Maybe I’m misunderstanding your request, but why not just use pymol? You can make sessions entirely programmatically with python which you can then open in the GUI.
- Does anyone know this 3D style for molecules?
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Why would a business decide to make software open source ?
Indeed. What I had in mind was this one or this one or this one and to a certain extent even Blender.
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Best software for making structure models figures for scientific articles?
Pymol remains open-source and you can download and install it yourself (https://github.com/schrodinger/pymol-open-source). If you prefer not to, you can install open-source builds using homebrew on MacOS, apt-like managers on Linux, or following these instructions on Windows.
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PyMOL
no, there is a separate version called pymol open source (see https://pymolwiki.org/index.php/Windows_Install and https://github.com/schrodinger/pymol-open-source) that you can also install via anconda (or on linux via for example sudo apt-get install pymol) .
What are some alternatives?
PyQtGraph - Fast data visualization and GUI tools for scientific / engineering applications
VisPy - Main repository for Vispy
DicomToMesh - A command line tool to transform a DICOM volume into a 3d surface mesh (obj, stl or ply). Several mesh processing routines can be enabled, such as mesh reduction, smoothing or cleaning. Works on Linux, OSX and Windows.
awesome-python-chemistry - A curated list of Python packages related to chemistry
LITOS - LITOS - an easy-to-use tool for optogenetic cell stimulation
ampscan - ampscan is an open-source Python package for analysis and visualisation of digitised surface scan data, specifically for applications within Prosthetics and Orthotics (P&O), with an aim to improve evidence-based clinical practice towards improved patient outcomes.
visvis - Visvis - the object oriented approach to visualization
3Dmol.js - WebGL accelerated JavaScript molecular graphics library